Journal papers.


[1] G. Kowadlo and R.A. Russell. Improving the robustness of naive physics airflow mapping, using bayesian reasoning on a multiple hypothesis tree. Robotics and Autonomous Systems, 57(6-7):723-737, 2009.
Previous work on robotic odour localisation in enclosed environments, relying on an airflow model, has faced significant limitations due to the fact that large differences between airflow topologies are predicted for only small variations in a physical map. This is due to uncertainties in the map and approximations in the modelling process. Furthermore, there are uncertainties regarding the flow direction through inlet/outlet ducts. We present a method for dealing with these uncertainties through the generation of multiple airflow hypotheses. As the robot performs odour localisation, airflow in the environment is measured and used to adjust the confidences of the hypotheses using Bayesian inference. The best hypothesis is then selected, which allows the completion of the localisation task. Experimental results show that this method is capable of improving the robustness of this method for odour localisation in the presence of uncertainties, where previously it was incapable. The results further demonstrate the usefulness of naive physics for practical robotics applications.
[2] G. Kowadlo and R.A. Russell. Odour localisation: A taxonomy and survey. International Journal of Robotics Research27(8):869-894, 2008.
Robotic odour localisation has become a prominent research area in recent years. It promises many valuable practical applications, as well as contributing to knowledge of biological odour localisation, which has in many cases been the source of inspiration. There have been a diversity of approaches, implemented in both simulated and practical experiments, with a wide variety of platforms, and in a number of environments. This article presents a survey of the existing methods, which have been organised into taxonomic classifications. This provides a framework in which to evaluate the methods, view how they relate to each other, and make qualitative comparisons. The methods are grouped at the highest level by environmental conditions, and then by the localisation method which in most cases is closely associated with the type of sensors used.
[3] G. Kowadlo and Nathan E. Hall and Antony W. Burgess. De novo design of ß-helical polypeptides. Growth Factors, 25(3):168-190, 2007.
  The original publication is available through http://www.informaworld.com or directly from the DOI 10.1080/0897719070167977G. 

Many proteins, including several growth factor receptors such as the IGF-1R and EGFR family, contain variants of the b.beta-helix fold. Inspection of the irregular protein b.beta-helices suggested that different families of regular b.beta-helical polypeptides can be designed using a series of hinged vectors and the constraints imposed by the geometry of a peptide backbone. We have conceived b.beta-helices with five and six b.beta-strands per turn and designed, in detail, a series of regular b.beta-helices with rhomboidal or triangular cross-sections. Each b.beta-helix was modeled by threading Cagr atoms to follow the vectorial b.beta-helix and then creating the H-bonded polypeptide backbone and appropriate side-chain orientations. The conformational stability of these regular b.beta-helices was assessed using molecular dynamics simulations. Several potential repeat amino acid sequences were identified for different geometries of b.beta-helix. Regular b.beta-helices offer new possibilities for the study of protein folding, the production of nanofibers, catalysts, inhibitors of growth factor receptors and drug carriers.
[4] G. Kowadlo and R.A. Russell. Using naive physics for odor localization in a cluttered indoor environment. Autonomous Robots, 20(3):215-230, 2006. The original publication is available through: htpp://www.springerlink.com or directly from the DOI 10.1007/s10514-006-7102-3.
[ bib | .pdf ]
This paper describes current progress of a project, which uses naive physics to enable a robot to perform efficient odor localization. Odor localization is the problem of finding the source of an odor or other volatile chemical. Most localization methods require the robot to follow the odor plume along its entire length, which is time consuming and may be especially difficult in a cluttered environment. These drawbacks are significant in light of potential applications such as search and rescue operations in damaged buildings. In this project a map of the robot?s environment was used, together with a naive physics model of airflow, to predict the pattern of air movement. The robot then used the airflow pattern to reason about the probable location of the odor source. This approach, based on naive physics, has successfully located odor sources in a simplified environment. This demonstrates that naive physics can be used to assist odor localization operations and indicates that similar techniques have great potential for allowing a robot operating in an unstructured environment to reason about its surroundings. This paper presents details of the naive physical model of airflow, the reasoning system, the experimental equipment, and results of practical odor source localization experiments.

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